ATG9B

autophagy related 9B
General Information
Name autophagy related 9B
Alias
  • autophagy-related protein 9B
  • APG9-like 2
  • ATG9 autophagy related 9 homolog B
  • autophagy 9-like 2 protein
  • endothelial nitric oxide synthase antisense
  • nitric oxide synthase 3-overlapping antisense gene protein
Synonyms FLJ14885 APG9L2 SONE NOS3AS
Gene_family Autophagy related
organism Homo sapiens
entrez_id 285973
location 7q36.1
transcript_count 6
exon_count 19
Location
by NCBI GRCh38.p14
    Summary
      Entrez This gene functions in the regulation of autophagy, a lysosomal degradation pathway. This gene also functions as an antisense transcript in the posttranscriptional regulation of the endothelial nitric oxide synthase 3 gene, which has 3' overlap with this gene on the opposite strand. Mutations in this gene and disruption of the autophagy process have been associated with multiple cancers. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2012]
      nextProt Phospholipid scramblase involved in autophagy by mediating autophagosomal membrane expansion. Cycles between the preautophagosomal structure/phagophore assembly site (PAS) and the cytoplasmic vesicle pool and supplies membrane for the growing autophagosome. Lipid scramblase activity plays a key role in preautophagosomal structure/phagophore assembly by distributing the phospholipids that arrive through ATG2 (ATG2A or ATG2B) from the cytoplasmic to the luminal leaflet of the bilayer, thereby driving autophagosomal membrane expansion (By similarity). In addition to autophagy, also plays a role in necrotic cell death (By similarity).
    Interactions
    NCBI
    A A.Source B B.DB B.Source Description PubMed
    ATG9B BioGRID E7 GeneID BioGRID Affinity Capture-Western
    ATG9B BioGRID PRKN GeneID BioGRID Affinity Capture-MS
    ATG9B BioGRID STUB1 GeneID BioGRID Affinity Capture-Western
    ATG9B BioGRID TLN1 GeneID BioGRID Affinity Capture-MS; Affinity Capture-Western
    ATG9B BioGRID MYH9 GeneID BioGRID Affinity Capture-MS; Affinity Capture-Western; Reconstituted Complex
    ATG9B BioGRID ITGB1 GeneID BioGRID Affinity Capture-Western
    ATG9B BioGRID FLNB GeneID BioGRID Affinity Capture-MS
    ATG9B BioGRID FLNA GeneID BioGRID Affinity Capture-MS
    ATG9B BioGRID FASN GeneID BioGRID Affinity Capture-MS
    ATG9B BioGRID PLD5 GeneID BioGRID Affinity Capture-MS
    ATG9B BioGRID LACC1 GeneID BioGRID Affinity Capture-MS
    ATG9B BioGRID FBXO3 GeneID BioGRID Affinity Capture-MS
    ATG9B BioGRID FBXL4 GeneID BioGRID Affinity Capture-MS
    ATG9B BioGRID KIF3A GeneID BioGRID Affinity Capture-MS
    ATG9B BioGRID PEMT GeneID BioGRID Affinity Capture-MS
    ATG9B BioGRID PTDSS1 GeneID BioGRID Affinity Capture-MS
    ATG9B BioGRID GTF2IRD1 GeneID BioGRID Affinity Capture-MS
    ATG9B BioGRID PHKG2 GeneID BioGRID Affinity Capture-MS
    ATG9B BioGRID CAPZA2 GeneID BioGRID Affinity Capture-MS
    ATG9B BioGRID OTX1 GeneID BioGRID Two-hybrid
    ATG9B BioGRID HOXA1 GeneID BioGRID Two-hybrid
    StringDB
    A B experiments database textmining combined score hadb nhadb
    Ontologies
    ID Category Term Effect Evidence PubMed
    GO:0017128 Molecular Function phospholipid scramblase activity enables ISS
    GO:0005515 Molecular Function protein binding enables IPI
    GO:0000045 Biological Process autophagosome assembly acts_upstream_of_or_within IDA
    GO:0060349 Biological Process bone morphogenesis involved_in ISS
    GO:0000423 Biological Process mitophagy involved_in IBA
    GO:0034727 Biological Process piecemeal microautophagy of the nucleus involved_in IBA
    GO:0017121 Biological Process plasma membrane phospholipid scrambling involved_in IEA
    GO:0097300 Biological Process programmed necrotic cell death involved_in ISS
    GO:0034497 Biological Process protein localization to phagophore assembly site involved_in IBA
    GO:0061709 Biological Process reticulophagy involved_in IBA
    GO:0000139 Cellular Component Golgi membrane located_in ISS
    GO:0005776 Cellular Component autophagosome is_active_in IBA
    GO:0005789 Cellular Component endoplasmic reticulum membrane located_in ISS
    GO:0000407 Cellular Component phagophore assembly site is_active_in IBA
    GO:0034045 Cellular Component phagophore assembly site membrane located_in IEA
    GO:0055038 Cellular Component recycling endosome membrane located_in ISS
    GO:0005802 Cellular Component trans-Golgi network located_in ISS
    Pathways
    Name DB ID
    Macroautophagy Reactome R-HSA-1632852
    Autophagy Reactome R-HSA-9612973
    Nanoparticle triggered autophagic cell death (WP2509) WikiPathways WP2509_r101755
    Transcripts
    Accession Version MolecularType Name NCBI Comments
    NR_073169 1 miscRNA transcript variant 2 NC_000007 Reference
    NR_133652 1 miscRNA transcript variant 1 NC_000007 Reference
    XR_007060009 1 miscRNA transcript variant X3 NC_000007 Reference
    XR_002956421 2 miscRNA transcript variant X2 NC_000007 Reference
    XM_011516065 3 mRNA transcript variant X1 NC_000007 Reference
    NM_001317056 2 mRNA transcript variant 3 NC_000007 Reference